species:   Clros
pid:       PID2251
parent:    cro-mir-46
paralog:   
locus:     CADEHS020000002.2:2828841-2828933
matures:   ['AUUCCCCGUAUCGGAGA', 'AGGCUGGCGAGGCGAAUC']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000002.2:2828841-2828933

1891 out of bounds
328 alignments
328 proper strand
282 stranded perfect matches

***************                                                             **************** 
AUUCCCCGUAUCGGAGAUUGUGUAUGAAACAUUCUUUUUGGUCACUUUUUGAAGAUGAGCGUGCAUGCAUAAUGAGGCUGGCGAGGCGAAUCC
(((((((((..(((..((((((((((..((.(((.((((.(........).)))).))).)).))))))))))....)))))).)).))))..
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=36 c
--------------------------------------------------------------------------AGGCUGGCGAGGCGAAUC- l=18 a=0 c*
AUUCCCCGUAUCGGA------------------------------------------------------------------------------ l=15 a=94 ma
------------------------------------------------------------------------------UGGCGAGGCGAAUC- l=14 a=0 ma*

AUUCCCCGUAUCG-------------------------------------------------------------------------------- l=13 a=1 
gUUCCCCGUAUCGGA------------------------------------------------------------------------------ l=15 a=1 
AUUCCCCGUAUCGGA------------------------------------------------------------------------------ l=15 a=94 (ma)
AUUCCCCGUAUCGcA------------------------------------------------------------------------------ l=15 a=1 
AUUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=16 a=14 
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=36 (c)
AUUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=17 a=25 
AUUCCCCGUAUCGGAGAa--------------------------------------------------------------------------- l=18 a=1 
-UUCCCCGUAUCGG------------------------------------------------------------------------------- l=13 a=1 
-UUCCCCGUAUCGGA------------------------------------------------------------------------------ l=14 a=9 
-UUCCCCGUAUCGGg------------------------------------------------------------------------------ l=14 a=1 
-UUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=15 a=1 
-UUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=16 a=12 
--UCCCCGUAUCGGA------------------------------------------------------------------------------ l=13 a=21 
--UCCCCGUAUCGGAG----------------------------------------------------------------------------- l=14 a=4 
--UCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=15 a=2 
---CCCCGUAUCGG------------------------------------------------------------------------------- l=11 a=3 
---CCCCGUAUCGGA------------------------------------------------------------------------------ l=12 a=75 
---CCCCGUAUCGGAG----------------------------------------------------------------------------- l=13 a=14 
---CCCCGUAUCGGAGc---------------------------------------------------------------------------- l=14 a=3 
---CCCCGUAUCGGAGA---------------------------------------------------------------------------- l=14 a=2 
----CCCGUAUCGGA------------------------------------------------------------------------------ l=11 a=5 
----CCCGUAUCGGAG----------------------------------------------------------------------------- l=12 a=1 
-----CCGUAUCGGAG----------------------------------------------------------------------------- l=11 a=1 

mb-01011
ax-1011001
ku-01
ss-101011111100
fn-111
